Discipline-specific material and resources, in addition to the general material on the page "Reproducible research: general material".

Link to this page (please share widely!): http://bit.ly/rcr-in

🌍 Earth science & geosciences / 📍GIScience / 🗺️ geography & spatial sciences / 🌳 Ecology / 🌊 Hydrology / 🛰️ Remote Sensing

• Nüst, Daniel, and Pebesma, Edzer. 2020. Practical reproducibility in geography and geosciences. Annals of the American Association of Geographers. doi:10.1080/24694452.2020.1806028;
  PDF: Nüst-and-Pebesma_2020_AAM_Practical-Reproducibility-in-Geography-and-Geosciences.pdf
• Nüst, D., Ostermann, F. O., Sileryte, R., Hofer, B., Granell, C., Teperek, M., … Hettne, K. M. (2020, January 7). AGILE Reproducible Paper Guidelines. https://doi.org/10.17605/OSF.IO/CB7Z8
  (🇪🇸 Spanish translation)
• Alston, J. M., & Rick, J. A. (2021). A Beginner’s Guide to Conducting Reproducible Research. The Bulletin of the Ecological Society of America. https://doi.org/10.1002/bes2.1801
• Reproducible Research Techniques - Data Training by the National Ecological Observatory Network (NEON), covers documentation, R, git, tidy data, spatial data analysis
  
• A Hydrologist’s Guide to Open Science by Caitlyn A. Hall, Sheila M. Saia, Andrea Popp, Nilay Dogulu, Stan Schymanski, Niels Drost, Tim van Emmerik, Rolf Hut. https://doi.org/10.31223/X58P62
• Boeing, G., and Arribas-Bel, D. (2020). GIS and Computational Notebooks. The Geographic Information Science & Technology Body of Knowledge (1st Quarter 2021 Edition), John P. Wilson (Ed.). DOI: 10.22224/gistbok/2021.1.2 (link is external).
• Cross-disciplinary data practices in earth system science: Aligning services with reuse and reproducibility priorities. An Yan, Caihong Huang, Jian-Sin Lee, Carole L. Palmer First published: 22 October 2020. https://doi.org/10.1002/pra2.218
• Crystal-Ornelas, Robert, Brandon Edwards, Katherine Hébert, Emma J. Hudgins, Luna L. Sánchez-Reyes, Eric R. Scott, Matthew Grainger, et al. 2022. Not Just for Programmers: How Github Can Accelerate Collaborative and Reproducible Research in Ecology and Evolution. MetaArXiv. July 13. https://doi.org/10.31222/osf.io/x3p2q 
  

🧬 Life science / 🩺 Medicine / 🧠 Neuroscience / 🌱 Biology / Bioinformatics

• Reproducible Medical Research with R: https://bookdown.org/pdr_higgins/rmrwr/
  
• Ten simple rules on how to create open access and reproducible molecular simulations of biological systems: https://doi.org/10.1371/journal.pcbi.1006649
  
• http://reproducible-bioinformatics.org
• https://www.protocols.io/
• Reagent sharing (overview slidedeck): https://repro4everyone.org/docs/reagent-sharing/
• https://kbroman.org/pages/teaching.html
• Eglen, S., Marwick, B., Halchenko, Y. et al. Toward standard practices for sharing computer code and programs in neuroscience. Nat Neurosci 20, 770–773 (2017). https://doi.org/10.1038/nn.4550
• Research Reproducibility & Replicability Webinar in clinical informatics in the midst of the COVID-19 pandemic (U of A Research Reproducibility & Replicability Committee, Nov 2020): https://scholarworks.uark.edu/oreievt/1/
  
• Portable Encapsulated Projects (PEP) for standardized sample metadata structure for biological research: http://pep.databio.org/
• Practical Resources for Enhancing the Reproducibility of Mechanistic Modeling in Systems Biology by Michael L. Blinov, John H. Gennari, Jonathan R. Karr, Ion I. Moraru, David P. Nickerson, Herbert M. Sauro. arXiv:2104.04604 [q-bio.QM]
• Veronica Porubsky, Lucian Smith, Herbert M Sauro, Publishing reproducible dynamic kinetic models, Briefings in Bioinformatics, Volume 22, Issue 3, May 2021, bbaa152, https://doi.org/10.1093/bib/bbaa152 (systems biology)

• Juan Luis Riquelme & Julijana Gjorgjieva, Towards readable code in neuroscience: https://doi.org/10.1038/s41583-021-00450-y 

• Heil, B.J., Hoffman, M.M., Markowetz, F. et al. Reproducibility standards for machine learning in the life sciences. Nat Methods 18, 1132–1135 (2021). https://doi.org/10.1038/s41592-021-01256-7

⛏️ Archaeology

• Reproducibility and Transparency in Archaeological Science (workshop by B. Marwick, using rrtools)
  
• Marwick, B., & Wang, L. (2019, August 22). How to align disciplinary ideals with actual practices: Transparency and openness in archaeological science. https://doi.org/10.31235/osf.io/s8z6u
• Schmidt, S. C., & Marwick, B. (2019, January 5). Tool-driven Revolutions in Archaeological Science. https://doi.org/10.31235/osf.io/4nkxv

🧮 Mathematics

• Jörg Fehr, Jan Heiland, Christian Himpe, Jens Saak. Best practices for replicability, reproducibility and reusability of computer-based experiments exemplified by model reduction software[J]. AIMS Mathematics, 2016, 1(3): 261-281. https://10.3934/Math.2016.3.261
• Gray C.T., Marwick B. (2019) Truth, Proof, and Reproducibility: There’s No Counter-Attack for the Codeless. In: Nguyen H. (eds) Statistics and Data Science. RSSDS 2019. Communications in Computer and Information Science, vol 1150. Springer, Singapore. https://doi.org/10.1007/978-981-15-1960-4_8

😔😂 Psychology

• Open Science Initiative der Institute für Psychologie der Universität Münster

• Hardwicke, T. E., Bohn, M., MacDonald, K. E., Hembacher, E., Nuijten, M. B., Peloquin, B., … Frank, M. C. (2020, July 13). Analytic reproducibility in articles receiving open data badges at Psychological Science: An observational study. https://doi.org/10.31222/osf.io/h35wt
• Data & file management in Psychology (source): Videos, slides ("Unit5")
• Rouder, Jeffrey N., Julia M. Haaf, and Hope K. Snyder. “Minimizing Mistakes in Psychological Science.” Advances in Methods and Practices in Psychological Science 2, no. 1 (March 2019): 3–11. https://doi.org/10.1177/2515245918801915
  
• Wiebels, K., & Moreau, D. (2021). Leveraging Containers for Reproducible Psychological Research. Advances in Methods and Practices in Psychological Science, 4(2), 251524592110178. https://doi.org/10.1177/25152459211017853

💱 Economics

• Christensen, Garret, and Edward Miguel. 2018. "Transparency, Reproducibility, and the Credibility of Economics Research." Journal of Economic Literature, 56 (3): 920-80. https://doi.org/10.1257/jel.20171350
  

🗳️ Political Science

• Peer, L., Orr, L., & Coppock, A. (2021). "Active Maintenance: A Proposal for the Long-Term Computational Reproducibility of Scientific Results." PS: Political Science & Politics, 1-5. https://doi.org/10.1017/S1049096521000366

🤔 Philosophy

• Stanford Encyclopedia of Philosophy on Reproducibility of Scientific Results: https://plato.stanford.edu/entries/scientific-reproducibility/

🖥️ Computer science & ⚙️ Engineering

• CiSE special track for reproducible original research, case studies/reproductions, and methods/tools: https://www.computer.org/digital-library/magazines/cs/track-calls-for-papers

🧑‍🤝‍🧑 Social science & humanities

• Peels, R., Bouter, L. The possibility and desirability of replication in the humanities. Palgrave Commun 4, 95 (2018). https://doi.org/10.1057/s41599-018-0149-x

📱📟 Communication

• Tobias Dienlin, et al. An Agenda for Open Science in Communication, Journal of Communication, Volume 71, Issue 1, February 2021, Pages 1–26, https://doi.org/10.1093/joc/jqz052

Are you interested in a different discipline and know about or look for useful links? Let us know at o2r.support@uni-muenster.de - Thanks!

🔥 Physics, 🔬 Chemistry, 🦑 Zoology,  🌌 Space Science/Astronomy, 🤟 Linguistics, ...