You can generate URL access areas for specific data for batch web download, share data with other collaborates that are not in your group or member of our OMERO system or for third party use.
All operations are available in OMERO.web.
Your areas will be listed under the OpenLink Tab on the right pane in OMERO.
The links will guide you to an html page of your area where you can access or download single files.
For batch download use the provided curl file.
- In OMERO.web select projects, datasets or images which you want to add to an OpenLink area
- Open script under Scripts>export_scripts>Create OpenLink
3. Specify a name for a new OpenLink area or select an existing area
4. Press Run Script
The output:
The OpenLink gives a Batch Download Command (see above) in this format:
curl -s https://omero-imaging.uni-muenster.de/openlink/rn_DP3RNJNRMUVV_2611_jens%20test/batch_download.curl | curl -K-
Just copy the URL beginning with "https..." and ending with ".../" leaving out the "batch_download.curl" at the end.
Then paste it into the adress-line of your browser and you will get access to a webpage displaying the contents to download:
The batch download generates in your target directory a structure like:
OpenLinkAreaName > Project > Dataset > Image.
WINDOWS:
- In the OpenLink tab copy the batch command (take care that it starts with "https" instead of "http"!!)
- On your local system open the Windows Explorer and navigate to the directory where you
want to download the data
- In the path field of the Explorer type cmd and press enter (a CMD window appears)
- Paste the copied command in the CMD-prompt window and hit enter
LINUX/MAC:
- In the OpenLink tab copy the batch command
- Open a terminal/shell and change to your target data directory
- Paste the copied command here and type enter
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